Hey, thanks for the report. To clarify: autoApprove isn’t supported in mcp.json. Valid fields are: command, args, env, envFile, url, and headers.
The real issue is that “Run Everything” mode isn’t working for MCP tools, this is a known bug affecting many users: MCP Allowlist doesn't work, also can't be edited
Workaround:
- Quit Cursor
- Run this community script (it updates your database): MCP Allowlist doesn't work, also can't be edited - #14 by primate
- Relaunch Cursor
This should make “Run Everything” work properly with your Atlassian MCP until the team ships a fix.