Hey, thanks for the detailed report. The fact that skills/subagents/MCP show up, but commands don’t, is a helpful signal.
First, check one thing: open Settings and make sure the toggle Include third-party Plugins, Skills, and other configs is enabled. Plugin commands depend on this toggle, but skills/subagents/MCP don’t. So if the toggle is off, you’ll see exactly what you’re seeing now, everything except commands. After enabling it, reload the window using Cmd+Shift+P then run Developer: Reload Window, or use Cmd+Shift+R.
If the toggle was already enabled and commands still don’t appear in / after a reload, then it’s likely a bug on our side, and I’ll file it internally. Let me know what you see, and please confirm the toggle status before and after.
Related thread for context: Local plugin not loading commands