Hey, thanks for the feedback. WSL in the Agents Window is a known gap that we’re gradually closing. In 3.1 we fixed loading existing WSL workspaces, in 3.2 we added the Connect WSL flow, and more fixes are still coming. There are still some remaining issues, and I can’t share an exact ETA yet.
If you’re hitting a specific failure, like an install loop with the WSL extension or a hang on launch, please make a separate post with your Cursor version and a screenshot so we can take a closer look. Similar reports are already here: Agents Window (still) fails on WSL
About worktrees, you can describe their setup using .cursor/worktrees.json in the project root. It lets you define setup commands like installing deps, copying .env, and so on, including Windows specific commands. Details and examples are here: Worktrees | Cursor Docs
Let me know if a specific WSL scenario is still broken for you and we’ll dig in.