Cursor multi-agent worktree unable to copy

Bug Reports
1

Where does the bug appear (feature/product)?

Cursor IDE

Describe the Bug

I did a plan mode across 3 agents, claude-4.5-sonnet, gpt-5-codex, composer-1, and after claude generated 4274 new lines of code, and I clicked “Apply All” Cursor informed me that it couldn’t find the files.

Fortunately, I worked around it by asking it to manually copy and it is doing that now, but this is a pretty serious error! Hopefully one that can be easily fixed.

For others: the prompt that worked for me was:

I am trying to apply these changes, but Cursor says it can’t find the files. Can you copy them onto the main? (not the worktree)

Steps to Reproduce

create a plan mode with 3 agents.
do not set up the bash script for worktrees (note: The Learn More link did not take me to any documentation about worktrees)
click “Apply All” after building the plan

Operating System

MacOS

Current Cursor Version (Menu → About Cursor → Copy)

Version: 2.0.34
VSCode Version: 1.99.3
Commit: 45fd70f3fe72037444ba35c9e51ce86a1977ac10
Date: 2025-10-29T06:51:29.202Z
Electron: 34.5.8
Chromium: 132.0.6834.210
Node.js: 20.19.1
V8: 13.2.152.41-electron.0
OS: Darwin arm64 24.6.0

Does this stop you from using Cursor

No - Cursor works, but with this issue

2

Hey, thanks for the report. It looks like a bug in the new worktree‑based multi‑agent system in v2.0.34. Several other users are seeing similar issues where “Apply All” can’t find files generated in worktrees.

Great workaround, your manual copy is the best temporary fix right now.

I’ll pass this to the team. Could you also share:

  • The exact error message Cursor showed when clicking “Apply All”
  • Whether you can see the generated files in ~/.cursor/worktrees/

Also, could you update to the latest version and let me know if the issue still persists?