Files explicitly allowlisted in `.cursorindexingignore` are not indexed (e.g. .env, .prisma, .sql, package.json)

[llmgptaimodels]

Certain files that are explicitly allowlisted in .cursorindexingignore using ! rules are not being indexed by Cursor, even though they exist on disk and are not ignored by .gitignore or .cursorignore.
This prevents me from using Cursor’s codebase features as expected for these files.

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How to Reproduce:

1. Project structure (anonymized):

   <project_root>/
     .cursorindexingignore
     .gitignore
     .cursorignore
     <project_name>/
       package.json
       .env
       prisma/
         schema.prisma
         migrations/
           20250314063259_init/
             migration.sql
       _examples/
         some.json
   

2. .cursorindexingignore contents:

   <project_name>/*
   !<project_name>/.env
   !<project_name>/prisma/migrations/20250314063259_init/migration.sql
   !<project_name>/prisma/schema.prisma
   !<project_name>/package.json
   !<project_name>/_examples/*
   !<project_name>/.cursor/rules/*
   

3. .gitignore and .cursorignore:

   • Both files are empty or do not contain any rules that would ignore the above files.

4. Files exist on disk:

   • All the allowlisted files (e.g. .env, package.json, .prisma, .sql, .json) are present and readable.

5. Open the project in Cursor, wait for indexing to complete.

6. Check embeddable_files.txt:

   • Only a few files (or none) from the allowlist appear in the index, while most are missing.

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Expected Behavior:
All files explicitly allowlisted in .cursorindexingignore (using !) and not ignored by .gitignore or .cursorignore should be indexed and appear in embeddable_files.txt.

Actual Behavior:
Most allowlisted files (e.g. .env, package.json, .prisma, .sql, .json) are not indexed and do not appear in embeddable_files.txt, even after restarting Cursor and double-checking ignore files.

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Minimal Repro Example:

1. Create a test folder and file:

   mkdir -p test-cursor-index
   echo "hello" > test-cursor-index/should_be_indexed.txt
   

2. Add to .cursorindexingignore:

   test-cursor-index/*
   !test-cursor-index/should_be_indexed.txt
   

3. Ensure .gitignore and .cursorignore do not ignore this file.
4. Open project in Cursor, wait for indexing.
5. Check embeddable_files.txt:

   grep "test-cursor-index/should_be_indexed.txt" "$HOME/Library/Application Support/Cursor/User/workspaceStorage"/*/anysphere.cursor-retrieval/embeddable_files.txt
   

   • The file does appear in the index (minimal example works).
   • But for real project files (see above), they do not.

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Screenshots / Logs:

• Output of debug script showing missing files in embeddable_files.txt
• Directory listing showing files exist on disk

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System Info:

• OS: macOS (Sequoia 15.3.2)
• Cursor version: (please specify, e.g. 0.49.6)

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Does this block you from using Cursor?
Yes, it prevents me from using Cursor’s codebase features for key project files.

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Additional Notes:

• I have double-checked that the files are not ignored by .gitignore or .cursorignore.
• I have restarted Cursor and reloaded the project multiple times.
• The issue persists for files like .env, package.json, .prisma, .sql, and .json in <project_name>.
• The minimal test case works, but real project files are not indexed.

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Links:

• Cursor Ignore Files Documentation
• Cursor Forum Bug Reports
• GitHub Issues

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Thank you for looking into this!