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Create a multi-root workspace via File > Add Folder to Workspace, add frontend and backend as separate roots, then save it as a .code-workspace. In this setup, Source Control usually picks up both repos more reliably than when you open the parent folder.
Check your settings (Settings, search for git.):
git.autoRepositoryDetection: set to true or subFolders
git.repositoryScanMaxDepth: increase to 2 or higher
If the repos still don’t show up, open one file from each repo. Sometimes that triggers detection.
If none of that helps, reply here and I’ll add your report to the issue. If we get an update on the fix, I’ll post it in the thread.